| Bronze Commandeering Expertise Ribbon | Score 40,000 points in the recruit Green Goblin Mission |
| Bronze Distinguished Leadership Medal | Score 26,000 points in the Defend Wakanda Bonus Mission |
| Silver Medal of Marksmanship | Score 35,000 points in the recruit Gambit Mission |
| Bronze Meritorious Training Award | Score 50 points in the Hack Challenge Bonus Mission |
| Silver Outstanding Blitz Award | Score 25,000 points in the recruit Thor Mission |
| Gold Outstanding Efficiency Award | Score 17,000 points in the recruit Songbird Mission |
| Bronze World War Hulk Service Medal | Score 48,000 points in the Wakanda Pillar Defense Bonus Mission |
: If you choose "rebel," talk to Goliath before a mission an he'll give you a bonus mission you can play to unlock the following characters:
| Cyclops | Score 30,000 / Defend Cyclops and the civilians and defeat Scorcher |
| Gambit | Score 30,000 / Get all the Data Discs, defeat all the enemies and reach the exit |
| Jean Grey | Score 13,000 / Destroy all the targets with the drones and defeat Grey Gargoyle |
| Storm | Get 25,000 coins while standing in Thor's way |
| The Thing | Score 15,000 / Defeat the Lizard and every enemies in less than nine minutes |
| Thor | Get 15,000 coins in the time limit |
| Nanite Nick Fury | Beat the game |
Use teams of characters based on their comic book sources to take advantage of special bonuses:
*** Entering the following codes disables saving.
| GM | (Enter at any point in the game) DOWN,UP, UP, DOWN, DOWN, LEFT, RIGHT, DOWN |
| BM | (Enter in the Simulator) UP, RIGHT,DOWN, LEFT, LEFT, RIGHT, UP, UP |
| 99 | (Enter at the Hero Details Menu) DOWN,UP, LEFT, UP, RIGHT, UP, LEFT, DOWN |
| Plus 1 | (Enter at the Hero Details Menu)DOWN, UP, RIGHT, UP, RIGHT, UP, RIGHT, DOWN |
| And 10 | (Enter at the Hero Details Menu)DOWN, UP, LEFT, UP, LEFT, UP, LEFT, DOWN |
| Money | (Enter at the Hero Details Menu/Team Select Menu) UP, UP, DOWN, DOWN, UP, UP, UP, DOWN |
| Power | (Enter at the Hero Details Menu/Team Select Menu) UP, UP, DOWN, DOWN, LEFT, RIGHT, RIGHT, LEFT |
| Fusion Power is Four Stars | DOWN, UP, UP, DOWN, DOWN, LEFT, RIGHT, DOWN |